Ping Mu'Lab

Research

Our lab is dedicated to uncovering the molecular mechanisms that drive resistance to targeted and immune therapies in prostate and other cancers. We are also pioneering innovative therapeutic strategies to overcome these resistances, utilizing a range of state-of-the-art techniques, including 3D-cultured organoids, single-cell sequencing, and spatial transcriptomics.

Highlighted

Widespread regulatory activity of vertebrate microRNA species
Widespread regulatory activity of vertebrate microRNA* species
Jr-Shiuan Yang, Michael D. Phillips, Doron Betel, Ping Mu, Andrea Ventura, Adam C. Siepel, Kevin C. Chen, Eric C. Lai
RNA  ·  22 Dec 2010  ·  doi:10.1261/rna.2537911
SOX2 promotes lineage plasticity and antiandrogen resistance in TP53 - and RB1 -deficient prostate cancer
SOX2 promotes lineage plasticity and antiandrogen resistance in TP53 - and RB1 -deficient prostate cancer
Ping Mu, Zeda Zhang, Matteo Benelli, Wouter R. Karthaus, Elizabeth Hoover, …, Himisha Beltran, Mark A. Rubin, David W. Goodrich, Francesca Demichelis, Charles L. Sawyers
Science  ·  06 Jan 2017  ·  doi:10.1126/science.aah4307
Some cancers evade targeted therapies through a mechanism known as lineage plasticity, whereby tumor cells acquire phenotypic characteristics of a cell lineage whose survival no longer depends on the drug target. We use in vitro and in vivo human prostate cancer models to show that these tumors can develop resistance to the antiandrogen drug enzalutamide by a phenotypic shift from androgen receptor (AR)–dependent luminal epithelial cells to AR-independent basal-like cells. This lineage plasticity is enabled by the loss of TP53 and RB1 function, is mediated by increased expression of the reprogramming transcription factor SOX2, and can be reversed by restoring TP53 and RB1 function or by inhibiting SOX2 expression. Thus, mutations in tumor suppressor genes can create a state of increased cellular plasticity that, when challenged with antiandrogen therapy, promotes resistance through lineage switching.

All

2025

Androgen Deprivation-Induced TET2 Activation Fuels Prostate Cancer Progression via Epigenetic Priming and Slow-Cycling Cancer Cells
Androgen Deprivation-Induced TET2 Activation Fuels Prostate Cancer Progression via Epigenetic Priming and Slow-Cycling Cancer Cells
Lin Li, Siyuan Cheng, Yaru xu, Su Deng, Ping Mu, Xiuping Yu
Cold Spring Harbor Laboratory  ·  29 Mar 2025  ·  doi:10.1101/2025.03.26.645495

2024

Hyd UBR5 defines a tumor suppressor pathway that links Polycomb repressive complex to regulated protein degradation in tissue growth control and tumorigenesis
Hyd/UBR5 defines a tumor suppressor pathway that links Polycomb repressive complex to regulated protein degradation in tissue growth control and tumorigenesis
Pei Wen, Huiyan Lei, Hua Deng, Su Deng, Carla Rodriguez Tirado, Meiling Wang, Ping Mu, Yonggang Zheng, Duojia Pan
Genes & Development  ·  13 Aug 2024  ·  doi:10.1101/gad.351856.124
Restoring our ubiquitination machinery to overcome resistance in cancer therapy
Restoring our ubiquitination machinery to overcome resistance in cancer therapy
Xiaoling Li, Ping Mu
Oncoscience  ·  06 May 2024  ·  doi:10.18632/oncoscience.600
ZNF397 Deficiency Triggers TET2-Driven Lineage Plasticity and AR-Targeted Therapy Resistance in Prostate Cancer
ZNF397 Deficiency Triggers TET2-Driven Lineage Plasticity and AR-Targeted Therapy Resistance in Prostate Cancer
Yaru Xu, Yuqiu Yang, Zhaoning Wang, Martin Sjöström, Yuyin Jiang, …, Han Liang, Felix Y. Feng, Yunguan Wang, Tao Wang, Ping Mu
Cancer Discovery  ·  08 Apr 2024  ·  doi:10.1158/2159-8290.CD-23-0539

2023

UBE2J1 is the E2 ubiquitin-conjugating enzyme regulating androgen receptor degradation and antiandrogen resistance
UBE2J1 is the E2 ubiquitin-conjugating enzyme regulating androgen receptor degradation and antiandrogen resistance
Carla Rodriguez Tirado, Choushi Wang, Xiaoling Li, Su Deng, Julisa Gonzalez, …, Wei He, Jie Fan, Yunguan Wang, Tao Wang, Ping Mu
Oncogene  ·  29 Nov 2023  ·  doi:10.1038/s41388-023-02890-5
ZNF397 Loss Triggers TET2-driven Epigenetic Rewiring, Lineage Plasticity, and AR-targeted Therapy Resistance in AR-dependent Cancers
ZNF397 Loss Triggers TET2-driven Epigenetic Rewiring, Lineage Plasticity, and AR-targeted Therapy Resistance in AR-dependent Cancers
Yaru Xu, Zhaoning Wang, Martin Sjöström, Su Deng, Choushi Wang, …, Carlos Arteaga, Felix Feng, Yunguan Wang, Tao Wang, Ping Mu
Cold Spring Harbor Laboratory  ·  27 Oct 2023  ·  doi:10.1101/2023.10.24.563645
Mapping Cellular Interactions from Spatially Resolved Transcriptomics Data
Mapping Cellular Interactions from Spatially Resolved Transcriptomics Data
James Zhu, Yunguan Wang, Woo Yong Chang, Alicia Malewska, Fabiana Napolitano, …, Carlos L. Arteaga, Neil Desai, Xinlei Wang, Yang Xie, Tao Wang
Cold Spring Harbor Laboratory  ·  21 Sep 2023  ·  doi:10.1101/2023.09.18.558298
Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer
Loss of SYNCRIP unleashes APOBEC-driven mutagenesis, tumor heterogeneity, and AR-targeted therapy resistance in prostate cancer
Xiaoling Li, Yunguan Wang, Su Deng, Guanghui Zhu, Choushi Wang, …, Housheng Hansen He, Joshua T. Mendell, Bo Li, Tao Wang, Ping Mu
Cancer Cell  ·  01 Aug 2023  ·  doi:10.1016/j.ccell.2023.06.010
The Critical Interplay of CAF Plasticity and Resistance in Prostate Cancer
The Critical Interplay of CAF Plasticity and Resistance in Prostate Cancer
Xiaoling Li, Ping Mu
Cancer Research  ·  28 Jul 2023  ·  doi:10.1158/0008-5472.CAN-23-2260
Abstract 3891: Epigenetic rewiring promotes antiandrogen resistance and metastasis via heterogenous oncogenic drivers in prostate cancer
Abstract 3891: Epigenetic rewiring promotes antiandrogen resistance and metastasis via heterogenous oncogenic drivers in prostate cancer
Xiaong li, Su Deng, Julisa Gonzalez, Carla Rodriguez Tirado, Choushi Wang, Nickolas A. Johnson, Lauren Metang, Ping Mu
Cancer Research  ·  04 Apr 2023  ·  doi:10.1158/1538-7445.AM2023-3891

2022

Ectopic JAK STAT activation enables the transition to a stem-like and multilineage state conferring AR-targeted therapy resistance
Ectopic JAK–STAT activation enables the transition to a stem-like and multilineage state conferring AR-targeted therapy resistance
Su Deng, Choushi Wang, Yunguan Wang, Yaru Xu, Xiaoling Li, …, Jer-Tsong Hsieh, Bo Li, Ganesh Raj, Tao Wang, Ping Mu
Nature Cancer  ·  05 Sep 2022  ·  doi:10.1038/s43018-022-00431-9
The driver role of JAK STAT signalling in cancer stemness capabilities leading to new therapeutic strategies for therapy and castration resistant prostate cancer
The driver role of JAK‐STAT signalling in cancer stemness capabilities leading to new therapeutic strategies for therapy‐ and castration‐resistant prostate cancer
U‐Ging Lo, Yu‐An Chen, Junjie Cen, Su Deng, Junghang Luo, …, Lin Ho, Chih‐Ho Lai, Ping Mu, Leland W.K. Chung, Jer‐Tsong Hsieh
Clinical and Translational Medicine  ·  31 Jul 2022  ·  doi:10.1002/ctm2.978
SOX2 mediates metabolic reprogramming of prostate cancer cells
SOX2 mediates metabolic reprogramming of prostate cancer cells
Larischa de Wet, Anthony Williams, Marc Gillard, Steven Kregel, Sophia Lamperis, …, Angelo M. De Marzo, Ping Mu, Jonathan L. Coloff, Russell Z. Szmulewitz, Donald J. Vander Griend
Oncogene  ·  24 Jan 2022  ·  doi:10.1038/s41388-021-02157-x

2021

Overcoming oncogene addiction in breast and prostate cancers: a comparative mechanistic overview
Overcoming oncogene addiction in breast and prostate cancers: a comparative mechanistic overview
Eliot B Blatt, Noa Kopplin, Shourya Kumar, Ping Mu, Suzanne D Conzen, Ganesh V Raj
Endocrine-Related Cancer  ·  01 Feb 2021  ·  doi:10.1530/ERC-20-0272

2020

Abstract PO-117: CHD1-loss promotes tumor heterogeneity and therapy resistance in prostate cancer
Abstract PO-117: CHD1-loss promotes tumor heterogeneity and therapy resistance in prostate cancer
Zeda Zhang, Chuanli Zhou, Xiaoling Li, Charles Sawyers, Ping Mu
Cancer Research  ·  01 Nov 2020  ·  doi:10.1158/1538-7445.TUMHET2020-PO-117
Abstract NG06: CHD1-loss confers AR targeted therapy resistance via promoting cancer heterogeneity and lineage plasticity
Abstract NG06: CHD1-loss confers AR targeted therapy resistance via promoting cancer heterogeneity and lineage plasticity
Zeda Zhang, Chuanli Zhou, Xiaoling Li, Spencer Barnes, Su Deng, …, Amaia Lujambio, Sheng Li, Vankat Malladi, Charles Sawyers, Ping Mu
Cancer Research  ·  15 Aug 2020  ·  doi:10.1158/1538-7445.AM2020-NG06
Tumor Microenvironment-Derived NRG1 Promotes Antiandrogen Resistance in Prostate Cancer
Tumor Microenvironment-Derived NRG1 Promotes Antiandrogen Resistance in Prostate Cancer
Zeda Zhang, Wouter R. Karthaus, Young Sun Lee, Vianne R. Gao, Chao Wu, …, Brett S. Carver, Ping Mu, Xuejun Jiang, Philip A. Watson, Charles L. Sawyers
Cancer Cell  ·  01 Aug 2020  ·  doi:10.1016/j.ccell.2020.06.005
Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation
Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation
Zeda Zhang, Chuanli Zhou, Xiaoling Li, Spencer D. Barnes, Su Deng, …, Scott W. Lowe, Joshua T. Mendell, Venkat S. Malladi, Charles L. Sawyers, Ping Mu
Cancer Cell  ·  01 Apr 2020  ·  doi:10.1016/j.ccell.2020.03.001

2019

The paracrine induction of prostate cancer progression by caveolin-1
The paracrine induction of prostate cancer progression by caveolin-1
Chun-Jung Lin, Eun-Jin Yun, U-Ging Lo, Yu-Ling Tai, Su Deng, …, Ho Lin, Tsai-Kun Li, Tang-Long Shen, Chih-Ho Lai, Jer-Tsong Hsieh
Cell Death & Disease  ·  04 Nov 2019  ·  doi:10.1038/s41419-019-2066-3

2017

i Rb1 i and i Trp53 i cooperate to suppress prostate cancer lineage plasticity, metastasis, and antiandrogen resistance
Rb1 and Trp53 cooperate to suppress prostate cancer lineage plasticity, metastasis, and antiandrogen resistance
Sheng Yu Ku, Spencer Rosario, Yanqing Wang, Ping Mu, Mukund Seshadri, …, Myles Brown, Massimo Loda, Charles L. Sawyers, Leigh Ellis, David W. Goodrich
Science  ·  06 Jan 2017  ·  doi:10.1126/science.aah4199
SOX2 promotes lineage plasticity and antiandrogen resistance in TP53 - and RB1 -deficient prostate cancer
SOX2 promotes lineage plasticity and antiandrogen resistance in TP53 - and RB1 -deficient prostate cancer
Ping Mu, Zeda Zhang, Matteo Benelli, Wouter R. Karthaus, Elizabeth Hoover, …, Himisha Beltran, Mark A. Rubin, David W. Goodrich, Francesca Demichelis, Charles L. Sawyers
Science  ·  06 Jan 2017  ·  doi:10.1126/science.aah4307
Some cancers evade targeted therapies through a mechanism known as lineage plasticity, whereby tumor cells acquire phenotypic characteristics of a cell lineage whose survival no longer depends on the drug target. We use in vitro and in vivo human prostate cancer models to show that these tumors can develop resistance to the antiandrogen drug enzalutamide by a phenotypic shift from androgen receptor (AR)–dependent luminal epithelial cells to AR-independent basal-like cells. This lineage plasticity is enabled by the loss of TP53 and RB1 function, is mediated by increased expression of the reprogramming transcription factor SOX2, and can be reversed by restoring TP53 and RB1 function or by inhibiting SOX2 expression. Thus, mutations in tumor suppressor genes can create a state of increased cellular plasticity that, when challenged with antiandrogen therapy, promotes resistance through lineage switching.

2015

An allelic series of miR-17 92 mutant mice uncovers functional specialization and cooperation among members of a microRNA polycistron
An allelic series of miR-17∼92–mutant mice uncovers functional specialization and cooperation among members of a microRNA polycistron
Yoon-Chi Han, Joana A Vidigal, Ping Mu, Evelyn Yao, Irtisha Singh, …, Brett Carver, Licia Selleri, Doron Betel, Christina Leslie, Andrea Ventura
Nature Genetics  ·  01 Jun 2015  ·  doi:10.1038/ng.3321
MicroRNAs in Prostate Cancer: Small RNAs with Big Roles
MicroRNAs in Prostate Cancer: Small RNAs with Big Roles
Ping Mu Su Deng
Journal of Clinical and Cellular Immunology  ·  01 Jan 2015  ·  doi:10.4172/2155-9899.1000315
Targeting Breast Cancer Metastasis
Targeting Breast Cancer Metastasis
Xin Jin, Ping Mu
Breast Cancer: Basic and Clinical Research  ·  01 Jan 2015  ·  doi:10.4137/BCBCR.S25460

2012

Intact p53-Dependent Responses in miR-34 Deficient Mice
Intact p53-Dependent Responses in miR-34–Deficient Mice
Carla P. Concepcion, Yoon-Chi Han, Ping Mu, Ciro Bonetti, Evelyn Yao, Aleco D’Andrea, Joana A. Vidigal, William P. Maughan, Paul Ogrodowski, Andrea Ventura
PLoS Genetics  ·  26 Jul 2012  ·  doi:10.1371/journal.pgen.1002797

2010

Widespread regulatory activity of vertebrate microRNA species
Widespread regulatory activity of vertebrate microRNA* species
Jr-Shiuan Yang, Michael D. Phillips, Doron Betel, Ping Mu, Andrea Ventura, Adam C. Siepel, Kevin C. Chen, Eric C. Lai
RNA  ·  22 Dec 2010  ·  doi:10.1261/rna.2537911

2009

Genetic dissection of the i miR-17 92 i cluster of microRNAs in Myc-induced B-cell lymphomas
Genetic dissection of the miR-17∼92 cluster of microRNAs in Myc-induced B-cell lymphomas
Ping Mu, Yoon-Chi Han, Doron Betel, Evelyn Yao, Massimo Squatrito, Paul Ogrodowski, Elisa de Stanchina, Aleco D’Andrea, Chris Sander, Andrea Ventura
Genes & Development  ·  15 Dec 2009  ·  doi:10.1101/gad.1872909

2007

Valproic acid sodium inhibits the morphine-induced conditioned place preference in the central nervous system of rats
Valproic acid sodium inhibits the morphine-induced conditioned place preference in the central nervous system of rats
Ping Mu, Long-Chuan Yu
Neuroscience Letters  ·  01 Oct 2007  ·  doi:10.1016/j.neulet.2007.04.017